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Publications

2024

Transcriptomic diversity of amygdalar subdivisions across humans and nonhuman primates

Totty M, Cervera Juanes R, Bach S, Ben Ameur L, Valentine M, Simons E, Romac M,Trinh H, Henderson K, Del Rosario I, Tippani M, Miller R, Kleinman J, Cerceo Page S, Saunders A, Hyde T, Martinowich K, Hicks S, Costa V

Biorxiv, 2024

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AnnSQL: A Python SQL-based package for large-scale single-cell genomics analysis on a laptop

Pavan K and Saunders A. Biorxiv, 2024

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2022

Ascertaining cells’ synaptic connections and RNA expression simultaneously with barcoded rabies virus libraries

Saunders A, Huang KW, Vondrak C, Hughes C, Smolyar K, Sen H, Philson AC,  Nemesh J, Wysoker A, Kashin S, Sabatini BL & McCarroll, SA

Nature Communications, 2022

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2020

2020

Innovations present in the primate interneuron repertoire

Krienen FM, Goldman M, Zhang Q, del Rosario RCH, Florio M, Machold R, Saunders A [....] Berretta, S, Fishell G, Feng G & McCarroll, SA

Nature, 2020

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2019

Single-cell RNA sequencing of Microglia throughout the Mouse Lifespan and in the Injured Brain Reveals Complex Cell-State Changes

Hammond TR, Dufort C, Dissing-Olesen L, Giera S, Young A, Wysoker A, Walker AJ, Gergits F, Segel M, Nemesh J, Marsh SE, Saunders A, Macosko E, Ginhoux F, Chen J, Franklin RJM, Piao X, McCarroll SA, Stevens BF

Immunity, 2019

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2018

Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain

Saunders A*, Macosko E*, Wysoker A, Goldman M, Krienen F, de Rivera H, Bien E, Baum M, Wang S, Goeva A, Nemesh J, Kamitaki N, Brumbaugh S, Kulp D, McCarroll SA

Cell, 2018

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Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types

Finucane HK, Reshef YA, Anttila V, Slowikowski K, Gusev A, Byrnes A, Gazal S, Loh PR, Lareau C, Shoresh N, Genovese G, Saunders A, Macosko E, Pollack S; Brainstorm Consortium, Perry JRB, Buenrostro JD, Bernstein BE, Raychaudhuri S, McCarroll S, Neale BM, Price AL

Nature Genetics, 2018

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2016

Genetically Distinct Parallel Pathways in the Entopeduncular Nucleus for Limbic and Sensorimotor Output of the Basal Ganglia

Wallace ML, Saunders A, Huang KW, Philson AC, Goldman M, Macosko EZ, McCarroll SA, Sabatini BL

Neuron, 2016

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Cotransmission of Acetylcholine and GABA

Granger AJ, Mulder N, Saunders A, Sabatini BL

Neuropharmacology, 2016

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Globus pallidus externus neurons expressing parvalbumin interconnect the subthalamic nucleus and striatal interneurons

Saunders, A, Huang, KW & Sabatini, BL

PLoSONE, 2016

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2015

A direct GABAergic output from the basal ganglia to frontal cortex

Saunders, A, Oldenburg, IA, Berezovskii, VK, Johnson, CA, Kingery, ND, Elliott, HL, Xie, T, Gerfen, CR & Sabatini, BL

Nature, 2015

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Corelease of GABA and acetylcholine from cholinergic forebrain neurons

Saunders, A*, Granger, A* & Sabatini, BL

eLife, 2015

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Cre activated and inactivated recombinant adeno-associated viral vectors for neuronal anatomical tracing or activity manipulation

Saunders, A & Sabatini, BL

Current Protocols in Neuroscience, 2015

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Duplication and adaptive evolution of a key centromeric protein in Mimulus, a genus with centromere-associated female meiotic drive

Finseth, FR, Dong, Y, Saunders, A. & Fishman, L

Molecular Evolution, 2015

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2012

Recurrent network activity drives striatal synaptogenesis

Kozorovitskiy, Y*, Saunders, A*, Johnson, C, Lowell, BB & Sabatini, BL

Nature, 2012

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Novel recombinant adeno-associated viruses for Cre activated and inactivated transgene expression

Saunders, A., Johnson, C. and Sabatini, BL

Frontiers in Neural Circuits, 2012

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Fasting Activation of AgRP Neurons Requires NMDA Receptors and Involves Spinogenesis and Increased Excitatory Tone

Liu, T, Kong, D, Shah, B, Ye, C, Koda, S, Saunders, A, Ding, J, Yang, Z, Sabatini, B and Lowell, B

Neuron, 2012

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2011

Anterograde or retrograde transsynaptic labeling of CNS neurons with vesicular stomatitis virus vectors

Beier, KT, Saunders, A, Oldenburg, I, Miyamichi, K, Akhtar, N, Luo, L, Whelan, S, Sabatini, BL and Cepko, C

PNAS, 2011

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2008

Centromere-associated female meiotic drive entails male fitness costs in Monkeyflowers

Fishman, L. and Saunders, A

Science, 2008

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2007

How to use typological databases in historical linguistic research

Wichmann, S. and Saunders, A

Diachronica, 2007

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